NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10002401

Scaffold Ga0211676_10002401


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10002401 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18890
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (40.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F008885Metagenome / Metatranscriptome326Y
F012360Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000240121F008885AGGAMAVVIPKANRIPHDQPQQAFYMVSIDTSGFLDTETNNGGRISPCVAEDFATKPTTLAQSRLVSRGALRYKKMLELLQVRSNVGVRNLLTTYASDAGDNPITKLQFGLVYDNDNFIPTTGTAGDGSTTTSTKIGFIKDKISEALYGTFTERMQVFNPTSGAGLISNEEITAAPVLLVSQDEIMDAITVTEALDTATMVSGFRPTLASELPTDNADSDTAE
Ga0211676_100024013F002190N/AMKLCYYRCWVTKQNKTVEYGYGLPYKDIMKAVEEHYKDGADAVVMEMITEEQFNDRLPKP
Ga0211676_100024016F012360N/AMNYEHYKKLIDTKPWEKVEKHFDSLPVADVNLITTLDIKTQDWIQFTLDHFGDVQQKWEKPKEHYAEFSNELASVNNLLGRNEHNTHELNYGMNGDTNQTLKELLGKDNIARLNVNPDSVLMRFIVKLPGHGIAWHYDDAGSYKKKFSEFNFDRLKRLWFPVQDWKDGHAFQISKTVLTHWKAGDVYEIPFGLGHASSNFGLNPQYTVSFTGVLND
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