Basic Information | |
---|---|
Taxon OID | 3300020463 Open in IMG/M |
Scaffold ID | Ga0211676_10002394 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 18933 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (70.45%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_094 | |||||||
Coordinates | Lat. (o) | -32.7806 | Long. (o) | -87.0917 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008558 | Metagenome / Metatranscriptome | 331 | Y |
F009636 | Metagenome / Metatranscriptome | 315 | Y |
F101346 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211676_1000239424 | F101346 | AGGTGG | MTDEDTQTNVVQFPRKYVGVAPKVTNFDVMKLNKELQFADELTDGIMVSMIHNMDENDIEITDGSFIQDIAFLSEAVKAAIYRDRGFTHPFQNLIELISNVSYDEETKKHHVGMDMELIRELSEDFTEDDGPEKA |
Ga0211676_1000239432 | F008558 | AGGAG | MFNNVGHPIEGFAILECHPDQEPITVATHQCLGNAEEEKMVLNEMAEGTDFTFVVKETFGCMIETT |
Ga0211676_1000239433 | F009636 | GGAG | MGYFYQDWKEKKMFVENADGQFVMNFGEAEKSMIENLENAIINITEGASDEKRMGVGYMEYLVDCLKRGKVEVKWNIS |
⦗Top⦘ |