NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10000306

Scaffold Ga0211676_10000306


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10000306 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51854
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (69.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011932Metagenome / Metatranscriptome285N
F014251Metagenome264Y
F018641Metagenome / Metatranscriptome234N
F062248Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000030623F018641AGGAMFEKDKIYSLRLSDSSEIICKIVSSDDNKTVISNPFSLLPTQNGVQLLPAMMSADFAKNVTINTNNITLTCETSMDVHATYIQAVTGIVTPKKTILTG
Ga0211676_1000030632F011932GAGMRILEFTSRSDKPSAQQLTALAEYLLGRADDEATEHTVPIDVFLSMAHNMGVNITDQQLRTLATQDPLKNIIQNVDADNIVLVGAGITGEEGADTMTPDQAQDTVAGMADAANPLT
Ga0211676_1000030634F014251AGGAMASDNLRSRVTEKASRLLNKIADELLNSNPNAIFRNGDSIMAFADYEIVKESQDEYSVYKDDMLMTSCATCRIALSYCILDKNKMLTDAKNLVVLEDKILGRQNEMMHYRHVASSSKVDEFRREVVLHRLTSAKAEYQMLQKQLTKSINVAKYCQQKGFDNEII
Ga0211676_1000030647F062248N/AMIIEIENFLPNVLVDQLVTFAETNQDWQLQEMQEHLPRKKISWLLDSPIETIHNWFDNLPLFEHLDFMGVTLWKDDVDFKMSQHLDNDRVRVAVQVYLDNRKSPGTQFGDRTIEYGRNRGYIMYNNSTMIHGVPDQTPHEGRLSIYALYQ
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