NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211546_10001034

Scaffold Ga0211546_10001034


Overview

Basic Information
Taxon OID3300020462 Open in IMG/M
Scaffold IDGa0211546_10001034 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15550
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.2108Long. (o)-28.7989Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F025034Metagenome203Y
F030400Metagenome185Y
F040581Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0211546_1000103428F030400N/AMKELCEYSRQKKLARRHHHQEMIKIHGECTGMGQRWYKSPQKSSFPKQYKAAYNKIWR
Ga0211546_1000103431F008424N/AMEKKINILERLLYLTIICGFCFLCGVFYTFYKIDQRTWNEEILKARDIETRYINYPTKRNYKKDDLERIIYGK
Ga0211546_1000103433F025034N/AMDSRKAYEMMKEDYIDKEATELCNQIEKQLERIVSYDNGMLDDRTFSEIKSYAIKLLKEWHL
Ga0211546_1000103436F040581N/AMEFLENGNFNGIKFLGKRRVYNGYLNKEQSWKEYQKWAEINIY
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