| Basic Information | |
|---|---|
| Taxon OID | 3300020457 Open in IMG/M |
| Scaffold ID | Ga0211643_10064997 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1807 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_110 | |||||||
| Coordinates | Lat. (o) | -1.8505 | Long. (o) | -84.6318 | Alt. (m) | Depth (m) | 50 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005517 | Metagenome / Metatranscriptome | 398 | Y |
| F084114 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211643_100649971 | F084114 | N/A | WLNEFHLHQFKEIPKDDVKKYDRDIFAILKEPEKRYWDGITEWSTCWGTHEWWQHDDIMEWFPHFDRYTLRYSDMIEQVPDVKHFLKVDNGLSDKIETLAKEYDLNCPYGIDKIRPRYKRDKTTKNIHETVTPKFKQLVNDSPELKKKLEDYLAPDVWYYAKAK |
| Ga0211643_100649975 | F005517 | AGGA | MSKSNTELVKQIEAYGLKNKLQDLARKEEARRPFRHLPKQFSKGILIGNIAIVPKKWTGTRYVYVIADMMEARVLHEAINLK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |