NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211548_10321464

Scaffold Ga0211548_10321464


Overview

Basic Information
Taxon OID3300020454 Open in IMG/M
Scaffold IDGa0211548_10321464 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.8591Long. (o)-37.1728Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0211548_103214642F006666N/AVNPKSHKEFKKGIAEKVGVHPSVVDDFITFYYAKLRKSLSNLNYPRIQVDGLGTFHIRKKRLEHSIKKNKSILGNLKKRTYKGFAQSENILFNINIMEKALEQLKKDIIKKKNFKDANKELE
Ga0211548_103214643F004866N/ALSIKYQIVTYCFFNNIPIGASDLNFLKELSKKDNIELTKFCIELVNLNIFKSPQSARNAITKAEKKNLLIKTGNNKKTISINKDINIQNKGLVLLDYKVLGSESKES

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