Scaffold Ga0211548_10225102

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211548_10225102

Scaffold Ga0211548_10225102

Overview

Basic Information
Taxon OID	3300020454 Open in IMG/M
Scaffold ID	Ga0211548_10225102 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	911
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_150
Coordinates	Lat. (^o)	35.8591	Long. (^o)	-37.1728	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004819	Metagenome / Metatranscriptome	422	Y
F075319	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211548_102251021	F075319	GGAG	MGTRLADIIFDRTEDFLYEDERAMKLTPYVMAERCLQVEIKNIYLD
Ga0211548_102251022	F004819	GGAG	MQFYPKDEDPRLDERSARFHARVMKEDLGTLSYVFDQANRDINVARASTYVTWDYDKDMWCEVDHLMMTFYVKARTTDTREYLEDKINRDVVKLIKGPRYYKSAKVYCSIDMHYPEDESIYDIVKIPKAKRPAPYCVEGDEGDITYHVTLHIQECNPMDLIVYDEADRGDYFDLSGNNLETKEMETA

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