| Basic Information | |
|---|---|
| Taxon OID | 3300020452 Open in IMG/M |
| Scaffold ID | Ga0211545_10001293 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15938 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (17.24%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_152 | |||||||
| Coordinates | Lat. (o) | 43.6906 | Long. (o) | -16.8555 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F082328 | Metagenome | 113 | N |
| F086296 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211545_1000129312 | F086296 | N/A | MAEIALMVCAFSSLMSSVGGGFYMFKQEQKKKLIAEKKALDAVTVFTECDYKGVSTPIGEGDTESGSGFKSIIVPAGFSVETYPKQNKGGFKLTLGGPSDQKCTTIKSMVVTKV |
| Ga0211545_100012938 | F082328 | N/A | MLGNLFKTSGEPMGNTQLGFTIACLICSVMGIMGMMKIPVKSPPILAACALSACCSSSQTSSLINDVQKRVKQATPAEEPVEEPVEEPAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |