| Basic Information | |
|---|---|
| Taxon OID | 3300020451 Open in IMG/M |
| Scaffold ID | Ga0211473_10259309 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 894 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Leptotrichiaceae → Leptotrichia → Leptotrichia trevisanii | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_150 | |||||||
| Coordinates | Lat. (o) | 35.7956 | Long. (o) | -37.0998 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017220 | Metagenome | 242 | Y |
| F020442 | Metagenome | 224 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211473_102593092 | F020442 | GAGG | MDNNVLKKSALEKLEKLGLTKEEVLSLIDDGEETIVAEDGESDGDGESKSWQQLVMEEHLGYYNERYGTKYTFEEYYDAVVNEKIVVHYKWKEMLGLEEPTPFPVNPDYNAEKFKKHGN |
| Ga0211473_102593093 | F017220 | AGGAG | MDNPRLVQLTEKLNKYVALIKSENPNISDKELIDRASTMALTEQKTFEAKAGMVVSDAVADRFGDGTRITEAEDGAQLVRVDNAWQQSKGSKISEEGFHKKDHTTITMPKDIDITTPEGDSKAGKFVEELRAAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |