NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10104858

Scaffold Ga0211473_10104858


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10104858 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y
F044433Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_101048582F044433N/AMENLNNNQGRTDKQYEDSARFAGYSIISIIILIIFLTLFGGCATTHDTSKECCKSKKTST
Ga0211473_101048583F017556N/AMAYSKFKVGQAVSFPSNGLVGDRARKGGIITAIEKMYELKDENKRYYPNGKCRGELTTIKELSKGKHKGYAYRCKTIQPNGYIAEIVTVEEYNLRLSTEKEVMNSYTLYR
Ga0211473_101048584F007537N/AMKKLLILLAAGVMFTSCEKDFLDDYNQHHYEPEDMDYEFKITGRCTQDVNGYYRLPLIPQEDKQTLHRFGAYVTNIDKWGLPTRVTWTCDKFWYTPDTLGFTYIEIGNVPTGESPWSFQNFAVTGYEGLVVTIVNGSSYADPVKDSVYCMMAPIGAMVGDTATVWGKAYFEEGDITIEDEFKIIFE
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Institute for Fundamental Biomedical Research
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