NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10073997

Scaffold Ga0211473_10073997


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10073997 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030157Metagenome / Metatranscriptome186Y
F049044Metagenome / Metatranscriptome147N
F051469Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_100739971F030157N/AITVDYISDVSAEVTHSTASAATAGLKLSMDAIQNQGVNILGHGALGNSDTEQTYMVRADALDTISSTTTVAAIQAAIRALDGLTPDKVTATISSATAGDRDMSDTQVA
Ga0211473_100739972F049044AGGAGMAYSGSKVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDMSAETGDLTTGSTTAGLQMARHAFEHQGLRILAEGPLVDSDTQKTYMVRTDALDSLSSTTTKAALQAYIRTLDQSSSSFPGIAADLTGATVTETKIGILTANAVS
Ga0211473_100739974F051469AGGAGMIEKFTVEINVGDVVEIGRMHLANQEVKAIEIDKWGHPVVVLESGRKRGLFNFRLKKLIPEDVERKQEPEDVVMTKKQWAEAEKKIAEVKAKQT

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