NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10046692

Scaffold Ga0211473_10046692


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10046692 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2170
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F004235Metagenome / Metatranscriptome447Y
F025320Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_100466922F025320AGGAGMTTKVNPTKANTTDHLSGKTITAVTVDFAVNGTDFSATEMGPLGAVQLAIATMTQEATPIIITKLRSDGSNDGQVFDMVFEGEFGTDTYDGTNSETLAAYLQTVLRLLTSVGAGSVNLSSATVVAATAASF
Ga0211473_100466923F002093AGGAGMAYDTSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISDVSGEVTNPRASANTGALELSMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDALDTISSTTTVAAIQAAVRALNAMTPDKVTANISSATAADRDMGDTSVGA
Ga0211473_100466924F004235AGGAGGMATPQRTVDTLIAESRFIGKPITMIALDWDVDADASREAMEAILNTVLSRGTILAAGAVYDTGTKQDYILEGNLTDTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVACTIKSTLKFA
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Institute for Fundamental Biomedical Research
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