| Basic Information | |
|---|---|
| Taxon OID | 3300020451 Open in IMG/M |
| Scaffold ID | Ga0211473_10011200 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4343 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_150 | |||||||
| Coordinates | Lat. (o) | 35.7956 | Long. (o) | -37.0998 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F075433 | Metagenome / Metatranscriptome | 119 | N |
| F086698 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211473_100112003 | F086698 | GGA | VCVAKYVAGNNDSDKVQIHGTTGSGNIRAISALTQENNTSLLFTRQGREDFASATHPRMQVPSHQIAKQLPLLCGLQDVVAQTGFLITADSSNTVTVMIGGNSVSSTDGIPLVAGQSIFIDIVRLSKIYAIAATDPTSETCNLFWLDM |
| Ga0211473_100112005 | F075433 | AGGAG | MSDETVMAKVNAFAQELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFDSIDSETGEVSHGGREDYGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |