NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211642_10455056

Scaffold Ga0211642_10455056


Overview

Basic Information
Taxon OID3300020449 Open in IMG/M
Scaffold IDGa0211642_10455056 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → Candidatus Gastranaerophilales → unclassified Candidatus Gastranaerophilales → Candidatus Gastranaerophilales bacterium HUM_18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8191Long. (o)-84.6284Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012815Metagenome / Metatranscriptome277Y
F033597Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0211642_104550561F033597N/ALNGEDPDSIQTTLANSEPDTIFDRMKQSEQRKIARVATELAALNESFKGYIAQTGNAQFKYV
Ga0211642_104550562F012815N/APLNAFFTKNSVAVAGITERGKSFTSKQQQQLDTTLKWYQRVWILDSQWVDRASLVKSEALLQQGEYVFLWPEKFGKKFKDFNDIAITCKVDELKWDFIQKNTFDGLEGIVRLSEIKKYKNYTYLN

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