NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10060164

Scaffold Ga0211559_10060164


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10060164 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1858
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y
F040582Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_100601642F018906GAGGMKTCKANPLKLNETRFDHEAHKKGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILQYPIGTDGEITAELIYDTEINKHLGCVDVIGWLDFGGVDAILKQIRNYNTGEYAYNE
Ga0211559_100601643F012114GGAGMRERDYYNCVFPEKRPRSVWVVYDTQGSKIGEVAAMSETEARQKVAEHVMIPFRLSNIEE
Ga0211559_100601645F040582GGAGGMGIISVDFMSIIVGYVIGVALMWSLCNTFYGENYDGKETDSKYTRPKFDRRYHMLYGDPP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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