| Basic Information | |
|---|---|
| Taxon OID | 3300020442 Open in IMG/M |
| Scaffold ID | Ga0211559_10004780 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7385 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_140 | |||||||
| Coordinates | Lat. (o) | 7.416 | Long. (o) | 79.3102 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211559_100047804 | F089156 | N/A | MLIIQFSDYIDTTDFPVEIIQSFKHNTYLIDCEISEYNVISAITSAYPVSSMQSNEDCAYIDVYERHTTSYTTVSPEDTLAPLIEKLDLLAVQEPKILCFSWQMDRNYIVDYRIEQLIKAGHLVVCAGGNKDLPVMDISPVAVDGVIRVGGNKHNGYYQNWIDIYDVTDPTEPNSNKAVHNICTKMVHKQLELDYELGYYSDSSVRSAPWPLRLAQTPSNKAKYYEFNPVSNLRYCAGEHLIPVRPGDQVSVLYGGVQLEDYVDARYVDMGVEMPRGITFNLDSGWLYGTFKFKTNMFHRFQADINGQLFEYHMISCDADNKLTYEDVKNKYYNRPYDAPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYREYE |
| Ga0211559_100047805 | F034245 | GGA | MRGVTFSEFGNGQNVDMFVQAPDVIPRTPIIEAVETAKKIRQKFTKDLYVWCDYSVQHMYSQIAMQGFKMAGIDFVAAIPVLSNDLSKRENDCSIAYCESRGIKYELFPIDVPALFDGEEFEYYGEKFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVDMYSSWMFTQSYGEVLKSPTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDNTLRQRLAPFGPLTLKYASLQYTVKVDTRLKEMLEKHHETNFDFINKLF |
| Ga0211559_100047808 | F022909 | N/A | MVRNGRRQMDDISDKEILRTFFEGKIGCIEYSDKWLPQLEQFCSIAKDCGYENNSSPEAMKVDEIQYHCMIHIPTNEIYAVAGVQYMPEYKEGYYRIWTRLCRIPKNDIPMTRATRYGRGEMPEFDGLLYFNCEWATKQPNFKATFGTTLANKAYADNYVRSSNTITDYVKRNWWLKKGIAEPEGITEFYTVPQVVWRMYFDKFKELS |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |