NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10003167

Scaffold Ga0211559_10003167


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10003167 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9261
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010910Metagenome / Metatranscriptome297Y
F012114Metagenome283Y
F018906Metagenome232Y
F032992Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000316710F010910GGAGMLTIYTIFGMMVGFEGYDNGKVYFGVYTPNCEYGYVITPEEIYLDTIFEKK
Ga0211559_1000316713F018906AGGAGMKTCKANPLKLNETRFLADVHNKEGRYVKRYFFSNGLGASVVCHDGSYGGHSGFFELAIMKYKLGTDPEITSKFLCDTQINKDLGCVDVLAWLDFHDVASKLMEIRNYNTGEYAINE
Ga0211559_1000316714F012114GAGGMTDREYYNCVFPVSRPNVWVVYDAQNGNKIGEVGAMSESEARQKVAQHVMIPFTLSHIEE
Ga0211559_100031677F032992GGAGGMNNAMDPNFRYYDCSNIVNEITGEEENNLSIMVAVPKIDLSTAENRQENLAVISGIVEEQYGGGVQSFTYEEYTG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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