NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211518_10071431

Scaffold Ga0211518_10071431


Overview

Basic Information
Taxon OID3300020440 Open in IMG/M
Scaffold IDGa0211518_10071431 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1909
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F016276Metagenome / Metatranscriptome248Y
F084356Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211518_100714311F016276N/AMIIRGHSGQDIRRMMWRRRYKFLSVAVLIFIAVTLIGCSKPKPTLNALDKFWDTLGGKTTDLVKETK
Ga0211518_100714314F004368GGAGGMTGTRLADIIFDRHEEFLYEDSRAMKLTPYVMSERCIQVEASNIYKDYKSGDYDTLTYILEGGFKGYHNYESSELIEEYKAIEEQWYNLYECSELEFTPYEEDPIHKLEEEKV
Ga0211518_100714318F084356N/ADCVAVRGWRVRINGKIYPRGHYADDDTLDWTYRYTAPKTEEGRKIAIERALQEARLTVW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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