| Basic Information | |
|---|---|
| Taxon OID | 3300020439 Open in IMG/M |
| Scaffold ID | Ga0211558_10066481 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1783 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_141 | |||||||
| Coordinates | Lat. (o) | 9.846 | Long. (o) | 80.0607 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002188 | Metagenome / Metatranscriptome | 585 | Y |
| F003777 | Metagenome / Metatranscriptome | 469 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211558_100664812 | F002188 | AGGAG | MGVNELVKILEQVHEPDEYQMTAHDLNHDIYYIWKIEDVKMKDLNLNLREFRKEHSRFDIFINGQYILERDYITEHKGNIFYVKFKKSNFAYALKSSDDVIAEGDLETVXVNLNQIL |
| Ga0211558_100664813 | F003777 | AGGAG | MSKPKPNIITPFNDRERFKNLVQEVINDTTIFTHVPDSISLSGVLFTLTLSNKKLNYDDIKVDESSEYVDVYLQGIKKDASSYSVTDNGTNIVINFTENITLAPELIVNTDFSVKGKIVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |