| Basic Information | |
|---|---|
| Taxon OID | 3300020439 Open in IMG/M |
| Scaffold ID | Ga0211558_10001361 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13334 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_141 | |||||||
| Coordinates | Lat. (o) | 9.846 | Long. (o) | 80.0607 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F033111 | Metagenome / Metatranscriptome | 178 | N |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211558_1000136114 | F033111 | GGAG | MTDRVDLPYYFEVPELSMPPFDVTQYFIDEEEREIAKTDVKTSDRLTGNSRSNTANWYQSFIKVEENSSQDKRDFKQVNLYEEANFDLTKLIKEWLQDTLNLKFTSVLMLRTPAKANSRWHCEGPVFHTRQCALNFPVYGDFKKSEAQWATFPRFKNIDPRENEKHGFVTQTDMKDTEMLCRWTNQSVPGFQNTMIMHRGYNELGDTDRVILSAAVEDTADINVVYKKYIDGKLIK |
| Ga0211558_100013613 | F089156 | N/A | MIIVQFVDNIDTSKLPVDVIQSFKHNTFLLDCQLNEYDHINYITSNFGVYSMQNNNDCAYIDVYERHTTSYTTVLAEDTLAPLIEKLDLLEALKPQILCFSWQMDRNYIVDYRIQKLIEAGNMVVCAGGNQDLPVLDISPVAVEGVIKVGGNKHNGHYQNWIDLYDVTIPNQPNSNKAVHEVCELMSNKRLELDYELGFYSESHVRSAPWPLRLAQTPSNKTKFYEFMPVSNLRYIAGEHLLPSRPGDQVSILSGSIPLRSFVEPRYIDLEDSLPRGITFDPSVGWLYGTFKYKEDMFHRILADINGQLFEYHIISCDADNKPSYEECKKKYFNREYSMPPFDIREYWVPMARPVKLLEPGDPFVRTYNLNDYHLYRGTE |
| Ga0211558_100013614 | F034245 | GGA | MRGVTFSEFGNGKNVDMFVHAPEKMPGTPMQEAVKTAIQIREKFTKDLYVWCDYSVQHMYSQIAMQAFRMAGIEFVAAIPVLSNELSKRENDCTIAYCESRGIPYELFDIDVPALFNGPEFLYYGEKFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHETQEHAAEVSGKEYTNFQEHYVDMYSSWMFTQSYGDVLKSPTQDFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSFFGHDKYDKELRQKLSPFGPLTMKYASLQYTVKVDTKLKEMLETHYEQNFDFLNKLF |
| Ga0211558_100013617 | F022909 | N/A | MVRVGRRQMDDSNNQKILRTFFDGKIGCVELDDYWMPMLEKFCDVAGSLGFTQNASPDAMKVDKIKYHCMVHIPTEEIYAVGGVEYMPEYKEGYYRVWTRLSRIPNENIPMTKFVRYGRGHEMPEFDGLLYYNLKWASEQENFKATFGTTLANKAYSDNYVKSTNSITDYIKRNWWKRKGIAVPEGIFDFYQVPQVVWNINFEKFKEYSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |