NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10096345

Scaffold Ga0211576_10096345


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10096345 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045129Metagenome / Metatranscriptome153Y
F049660Metagenome / Metatranscriptome146Y
F095485Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100963452F045129N/AMSIEYIDQPYRDKIVEILSTDDSDEKKQSELKLYLLKEKYFKHFSSEPTWLTKEIIKDFK
Ga0211576_100963453F095485N/AMNASDLFKELGMGDEEMNEARNWVNYKHFSKTIPDILSLSEYVNTVYKHAVTVDAKPHQWFSERYMTERYLQSDVGIDSDYVTNLENRICKILQNGKNYELHIEKFLELCLGVVRKSLLALPKEVLMFLNQIYKGKY
Ga0211576_100963454F049660N/AMKRYSGKPRGLINQGGATHQKDRDKMKLQYGKNYNSIDFEMSDKITLANYKERTNPIGDLLVGGKKVELTWSECNKIITTLEDAKTSHQRKIQLGLFG
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