| Basic Information | |
|---|---|
| Taxon OID | 3300020438 Open in IMG/M |
| Scaffold ID | Ga0211576_10017273 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4432 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_133 | |||||||
| Coordinates | Lat. (o) | 35.4118 | Long. (o) | -127.7122 | Alt. (m) | Depth (m) | 45 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003169 | Metagenome / Metatranscriptome | 504 | Y |
| F003920 | Metagenome / Metatranscriptome | 462 | Y |
| F004488 | Metagenome / Metatranscriptome | 436 | Y |
| F004715 | Metagenome / Metatranscriptome | 427 | Y |
| F018008 | Metagenome / Metatranscriptome | 237 | Y |
| F018079 | Metagenome / Metatranscriptome | 237 | N |
| F028002 | Metagenome / Metatranscriptome | 193 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211576_1001727313 | F004715 | AGGA | MIYTDQEHEWLSKPAKKKRVSNQTADGSAPIEEDDRLWQRCWGIQTTIEVDGKRYTVPIQ |
| Ga0211576_1001727315 | F003920 | N/A | MLVRTVILYAVMTVCAVAFHEHTYAVWELKEDLQIRIMNLWELLQQLEYVDPDQRIMVYEEITHIRQDIERIVNLLIQHDQQQHP |
| Ga0211576_1001727316 | F003169 | GGTGG | MAMIKYPLYKKNNSRKNTLLYPGLTTVSLDRIITYMQYYYVMCQKGSLVHRCYVQLDPESADILHDSLEQRYDLVQVCDVPDSSVEPDTLIAPAP |
| Ga0211576_100172733 | F018008 | AGG | MEFLNSKKFIIMMLIVLVWMALSSCSPTEYADHQPPHETDQEMNAEITKDMEAMDREKAQADNPQPADFESIVDALGCMFDPSDCPLKKSKDEQKMDR |
| Ga0211576_100172734 | F028002 | AGGAGG | MKKVIDEIKKHKKATIGVAVIVLVFAWMLITNEPAPVEAQ |
| Ga0211576_100172736 | F004488 | GGAGG | MFARLRGWFETWKQNLFDAYDPPKPTVYKLGQKKYVKVKRLRTSSKAKGPYIK |
| Ga0211576_100172737 | F018079 | N/A | MYTLEKRKMIYIISRRPTWFHTHCLTPTPGTPLWFDPTWVVGDCELCRMDIDNQDWWNNCSYNQSQRKFYDLIEKDLKVWI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |