NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10003551

Scaffold Ga0211576_10003551


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10003551 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10877
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029403Metagenome188Y
F049560Metagenome146N
F056535Metagenome137N
F093737Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000355112F056535GGAGGMRYGRHGRLFPLEMNQKSLFYLQMFLHEYKDKGLRDTDEKRRSYNHALDQIRKGINGVHAHQSMNGLRPPRTYNFRSK
Ga0211576_1000355119F029403GGAGGMDPRQYKATISQNKAINKFLEEGYLVFVNVCEQGPIDIIVVNSKNGRTHFLDIKTSKGNTITKGKNVGGSGVKLKPHQKELGVRLCLVEGDEIRIVEKRETISQRQRKEKRFLNKARKGIHLLEEY
Ga0211576_100035514F093737AGGAGMTDITKYKSVIVRIETHSKLKKLAGKDKKISGILSQLVDKEFEKRKAAQ
Ga0211576_100035519F049560N/AMESGWHSLKDAMKTTPPEVLSVGYVLKETKEYLLLAADIGSDKMDNDVGRVTVIPGQWIVDKKEVK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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