NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211554_10014773

Scaffold Ga0211554_10014773


Overview

Basic Information
Taxon OID3300020431 Open in IMG/M
Scaffold IDGa0211554_10014773 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4803
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.2173Long. (o)-72.0327Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211554_1001477310F023484N/AMNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS
Ga0211554_1001477312F022313N/AMTYHYQPEQEYEQTKLERILKELQSIIKRENKRHMMDEHLSHSMRDLLEYEIIPLLEAEVNYDPTPQTSYDFFH
Ga0211554_1001477314F098218GGAGGMTSFSSWSKRPEEMRAAAKARAIAALHQKHSKGLTKLERAYLHALKTGRLDLDD
Ga0211554_100147737F019754AGGAMNNSDDFMFPSELEPAWPPSDDDIEAMELDAYDRQKLDDLIAEELWRESLPSVPTPAELNPNLK
Ga0211554_100147739F020110N/AMSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITAAQAEIELSDDGPSLEESSEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSVSPFA
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Biomedical Sciences Research Center "Alexander Fleming"
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