NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211554_10000873

Scaffold Ga0211554_10000873


Overview

Basic Information
Taxon OID3300020431 Open in IMG/M
Scaffold IDGa0211554_10000873 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22317
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (77.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.2173Long. (o)-72.0327Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018721Metagenome / Metatranscriptome233N
F040108Metagenome162Y
F045112Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0211554_100008732F040108AGAAGGMYNIFQIKISKEVSDYVNSNGLGHTGGEQKYPIYEAHMRLRHSFDDKIQFKNTDFQHYTKVCEVKKDAGLVCDGDSWMLRDLEDVFAVLNGRYYDEDTNTDIVHDAHVSGYKMKTITRKDGEVVTYRDMHSLSVGDIVEDVDNGTFHIVAGFGFEDITSNIVKEVA
Ga0211554_1000087320F045112AGGTGGMLLMTKPYGTQMTKLDHWKNVCKLHWKEIVTLSIALHWVVDLLILGPIVFAVGYFTGVHFGH
Ga0211554_1000087326F018721AGGAMYYIIDNTNQAIHREPNKKPYASTQYKTTGAAKAGITRTVKYYQKAYDQVAECVANGEPEYHAPMHNAYRDATESHFNLTHKQFASSYTIVAVEDYVEPMITKTGICPGTGKKITVTEGINTPHYMSTLSESYWSA
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