NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10000522

Scaffold Ga0211622_10000522


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10000522 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42495
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (20.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004631Metagenome / Metatranscriptome430Y
F014793Metagenome / Metatranscriptome260Y
F048245Metagenome / Metatranscriptome148N
F058116Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0211622_100005221F048245N/ATTELFTVRFRVIDQDWTEIPITIGRKTAGTELGWDIDVENTDGYVNKRSMPFDTRPADGIYGMVYPVPTLGPITFDLTVPDNGEYLVRVISYSNREYIRTRRTFFAGWVQFQMDLSTLPQGVYLLQVTNGKFVKTFKTIKK
Ga0211622_100005222F058116N/AMAKEENKFFSEVKNQIIAGVGLVIAAGFGIFITNMESYFGPEEEPAPVVVQDSIQKPQIIINNIVEKKEAPKVIVKEVEKKEDEITW
Ga0211622_1000052225F014793N/AMFENEVFWKDGFTGKAKGGVFFRSFDLNKFLSKIESEDQEVVGIRFDGNNLEVVLNDEPRMEV
Ga0211622_1000052249F004631N/AMVQPKSKTKGTRVKHIKTFEAFLLTEKPYSKSEIVVFDLDDTLVITDAKIKVCDKSNGKCFSLTPEEFNEYESKPSHELDFTDFADIEIMKAGKLIEHYLNIFKRNYKKGIAVGIVTARDDREMIYKWLREHVGFRIDKDLIFAISDPVHKFKGPIANRKKQAFETYINMGYTDFKFYDDDVANLKLVKSLEKEHDNIRIYTKKAKKPKY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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