NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211622_10000027

Scaffold Ga0211622_10000027


Overview

Basic Information
Taxon OID3300020430 Open in IMG/M
Scaffold IDGa0211622_10000027 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195715
Total Scaffold Genes218 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (10.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.8951Long. (o)-140.3174Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052890Metagenome142Y
F063837Metagenome129Y
F066916Metagenome126Y
F068524Metagenome124Y
F082800Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211622_10000027100F052890N/AMNKLDTLYPTEVYSDYLVDPSIMDSIFEDTGEKRKVIFYDYTDTNNHTNFIKDISSEFLTMNGHKHNPDRWYMDVIRYNLQNEEKRVKSGLAWHVENDNYPNVITVLMYLRLDEGIIDGNLRYKDKENVKKVLEITSGTTVIMDGNVPHKPQDPYGTGKRDLIIISFKKD
Ga0211622_1000002712F063837AGGAVNRPLRKNNMNCQNNWVEMTDEELAIAAYGEGIPPESLKDEEEGGETIIITVSMDSETTQMPFGTVNTGPFLELFWRKTGADCDGEEELMQLPDGNTYLISLAEHCE
Ga0211622_10000027184F066916N/AMEIIKYLIFIGIITLIFVIYSEYSIGQILFRPDSSGIITMNLNSLLGFLANPFYRRDLWTWNTLDINYAFVLIYSLCIYYLF
Ga0211622_100000275F068524N/AMSMNTNTIANIELSESENEFLQFRHETTRSRIIKYIENGLPFDKAVIKEAGESLIAYYEYIKDNIKDEDKHKLNEFDDIPLTYHGEDLNEFEKDIFDRLPNIGKWQWSNYTRVWRALEEADECLMEFVYHEANYLCQAPQNST
Ga0211622_1000002782F082800N/AMNYNFYILLILSLLIGSPVVFLKNDILKEFSITEEIIYADIGILIIASSIYFLYENKSFKHLIRHFDSDIIYKYILYVTLITIGLLIGNYIVKNEGKVVKYKTFQRSLSLILLVALGHFIFGERLTKNKCLGIGIILIGLYIFDK
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