NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10212901

Scaffold Ga0211521_10212901


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10212901 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005743Metagenome / Metatranscriptome391Y
F018266Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0211521_102129012F005743AGGAGMKRNLIVYKVDYVNTSEPYNYRTGKFVRTKRIVMTPDEVDQTNGYWRNHRNVEKKFAMQMMGKEDAYYDSKYRVTRVRKA
Ga0211521_102129014F018266AGGAGGVFRVILENKFRENPINLSRAVKLLYNQDFTGSIRKENILWWKKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPSSSDKRELLVLNKIYG

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