| Basic Information | |
|---|---|
| Taxon OID | 3300020427 Open in IMG/M |
| Scaffold ID | Ga0211603_10053323 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1480 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_065 | |||||||
| Coordinates | Lat. (o) | -35.2792 | Long. (o) | 26.382 | Alt. (m) | Depth (m) | 850 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F013646 | Metagenome / Metatranscriptome | 269 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211603_100533231 | F000730 | GAG | LVNELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSIHTDSQIDDLLNNSPRMLNEVNKKIQEQRAQNVTDEQMSGLIRNKQMLELITNNAEVINIIGKPIIKKLLGFVKAI |
| Ga0211603_100533232 | F000704 | AGGTGG | MPHASRLEPSNIKSVSVYNVGDYGEDLFLPFTDVGLTETAITFSTATVTRDTDDSNQPMDDFPAIYSDTDSGVLQNEGNNTAFSQTYVFTPDMTAICYAIHLIFPAAVICSAFTSGTLNVGALHIKLTERSTNDRLLYENTFQSGAANLTGTGTSLHIFQQDVVETILVRKGNPIDILVELVTVTTGTNTRQEGYVTPAPYLKTAVMKRFTPAGIALHLHADLSHADGVYKYTKNRVSSLGQ |
| Ga0211603_100533233 | F013646 | N/A | VSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |