NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211603_10034540

Scaffold Ga0211603_10034540


Overview

Basic Information
Taxon OID3300020427 Open in IMG/M
Scaffold IDGa0211603_10034540 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1863
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2792Long. (o)26.382Alt. (m)Depth (m)850
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F045805Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0211603_100345401F045805N/AIWRAGKYRPALIYGYSPIYSVWSKAMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDLLEQKATEDPYMIHPLLVESDKTGKNLAQWLDFTGSLKELEFIAVRKELRMIIGAIYGVLPLYYGEMPSGWSQEGLQVTITNRAVKWGQDILYKSFFKKIGEILGVNDWDLKLKAGEENDKLMELQTDAAELANMQQLQAMGFEVARTHTGDFKVSKDPVFSTREMLEMSMGGGQIGEGQEKRDPERTRFQGEPQVPRSSDIGGIGQGSPSSGKGTSMSKKNFPTGITPTNYDVVKKTLQSSVDYGWSKTKTVDELRKFASMTVRQAREVVKNEFESTRRWEDGEE
Ga0211603_100345403F001235GAGMGTKLNVDAGSDIGKKLWKRHQDDEYTHVDNYKEAICLNCFSKDAAAATIADICGDCAGKRGREPLLAKITDKMYGLCFFCGKHKFHIEQINARFCHSCHRKIADVTKNYNKKGGMFGTDPFWLSMKKKHGKDWKFVFNDPTKSLRR
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