NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211620_10000934

Scaffold Ga0211620_10000934


Overview

Basic Information
Taxon OID3300020424 Open in IMG/M
Scaffold IDGa0211620_10000934 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13960
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_048
CoordinatesLat. (o)-9.4112Long. (o)66.3281Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F005720Metagenome / Metatranscriptome392Y
F073442Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211620_1000093410F000464N/AVLLNIYTFMKLSKQQKIRLYSHHDHDIDDLDGEFWPVMGILASILALWTGLIHLVDYLTWNIIPWWAEPFTITPVIFFIVMHEKYDSVNPVHWWPMFWGYSVTLPDDDRITIRPLDTERIMKQHGGRCNVHIVDYETIKFRKRKDAVLFGLINS
Ga0211620_1000093413F073442AGGMQRNFILTDLMKTGKHEDVDKFFSLHSLQDQTFELESEYYCLHNYDLDGYDRRFAIVDVRYDNHRLKNNDEFKMELEKRCKLLHSQGFKFISATPWESLDNISQTEPYPTLQVDHIKWTGGVSWFWSYMYHKHKDKKYIFDHTHKKYDFLYLNKCPRQHRVKMFNKLNKLGTLKKSLYTNWPHKKLPAEYELPWAQDYPQYGRDQDIYEKPYNDTACSIVSETNDNDKEIFMTEKIWKPIIAQQIFIVHGNYLYLQRLREMGFRTFNNYFEEVYDLDRDPDIRINTIADVCDRLCDAPWQDIYLQTKALRQYNHDNFFNKEKLSLEINKTLNLFLEFADSGQITS
Ga0211620_1000093418F005720N/AMSRRQSFNGKGLTFIEMMFDDEVTTTATTPDTKGSVFQDMSVLVGTFGTILAQSYTLAAKATEKDAAAAASIIEDELCDYYTFIVEGTPGQFNKADSAGDINLDPGQNETSDPGVIADAEADIEAEILDRISGSSDSAGGVHVDVRFLPADGVVSTGVDEVYGVNSARVNA
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