NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10171704

Scaffold Ga0211653_10171704


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10171704 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)955
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030729Metagenome184Y
F034754Metagenome174Y
F092880Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211653_101717042F030729AGGAGMKVTKKKIETILQQDERMKWVSLWYDRAVKQWVFVGGDSAMWSSSGTGVFRLDMLSVEEWVDYAYELAGRKRHVR
Ga0211653_101717043F092880GGAGGMKAGDLVQYNSRLLLVLRPNPDEYGYSAGWWQCMEVGTNRVRIYSPHQLTVIKTEAQFYL
Ga0211653_101717044F034754N/ASVKVGDLVDINQKRGTGSYESITPRGLGVVMRFEELEDLHYERIGTINLGPIVHVLLNTGETEGFASQSLEVVK

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