NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211653_10030247

Scaffold Ga0211653_10030247


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10030247 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2514
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018478Metagenome235Y
F025412Metagenome202Y
F100003Metagenome103N
F103288Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211653_100302472F103288N/AMNIIIISILAVLAWTSLFKQTFTTKEGFKYVYEPISKILYTLDFKPLNCSYCLSFWIGLALSIAFMDLSYMVIFLYFEINR
Ga0211653_100302473F025412N/AMNYRELKWGALKSYATKLGINTKGMTKVALLDCLAAMPEEAHEVGELKPFKGIKQEHPLFDEVEPYLPYLKAYKKLNAISRDPKVNEAIATLFLKYIEQDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI
Ga0211653_100302475F100003N/AMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVDETMLNRNRIEQNVKRI
Ga0211653_100302476F018478N/AMDWSKEYTYKDKKIYISHETKKYIICSFNENGQGKFKVDKTEFYG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.