NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211653_10005469

Scaffold Ga0211653_10005469


Overview

Basic Information
Taxon OID3300020421 Open in IMG/M
Scaffold IDGa0211653_10005469 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6555
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020879Metagenome / Metatranscriptome221Y
F030108Metagenome / Metatranscriptome186Y
F097450Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211653_1000546912F020879N/AMTAKQKKQINNFIQSTLKLVGCSFLFLGMTMALGISLNPHMELTAYLLLFVGTILMMTHSFRCNDHMFLLVSSAGFLLVGNAFLDTETAIAIANNYGIALTEEEGWFAKYGKLFVEILKAVA
Ga0211653_1000546914F097450AGGAGMQNVNTINQSKDKITSVNGYWISTVTCFNEDNDDSVTIQLTGLEAMWYNHEENIDHPEGSDYPTGINEPHRKLMIERVANSILARTGIDIANYDNVIHASTSPGRNPDGSFIESAMDDKIVRNV
Ga0211653_1000546916F030108AGGAGGMKNLFTIMIATMLSVPAFAADFNGKVGIASDNIFRGVNMSDGFGYSAQGNLSLDNGIFAGASVMSLDENSDLMTTMLVGYGFDLGGVNLNVAYVDRGFQGVDIDGWEELNVRADFDLFGVYYSKGLDDAGDFYKVDSSALKVVDVAYGDWDNAGSFWEVSKSFDLAAGSVKVGYIDHESNDEDFSDKITDVDNFYVGYSYSF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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