NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10002521

Scaffold Ga0211580_10002521


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10002521 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9328
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054787Metagenome139N
F066846Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_1000252112F066846N/AMLKIVTYTMYLITITDIETKNIQVHRLVFDNHRDCVRLAEAVNQVRDPISTKKNCRSVISYFEDLP
Ga0211580_100025217F054787N/AMFDAVEKPKNKGGRPAGSGGGQQLVEKIRGELTSAFKILERRKKPLHKLLADQLEVDASKTLNLMGKFLPPQLNMDSFGSEFKLALEDVAGRIAEQNALIKEQNEKTIDVKPDNT

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