| Basic Information | |
|---|---|
| Taxon OID | 3300020419 Open in IMG/M |
| Scaffold ID | Ga0211512_10000011 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 162810 |
| Total Scaffold Genes | 229 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 146 (63.76%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_004 | |||||||
| Coordinates | Lat. (o) | 35.5571 | Long. (o) | -6.5586 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015791 | Metagenome / Metatranscriptome | 252 | Y |
| F069324 | Metagenome / Metatranscriptome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211512_10000011121 | F015791 | N/A | MTRISILILLLVTLSGCMKTTCVTDLECKKTLDWNNPGFTVVRTIITQGANAGN |
| Ga0211512_100000119 | F069324 | N/A | MISDQDFRFLLEESRYAKKILEIGTGTGKSTTALVANRAEVYTIDRNNIFEYVGIEDNINRFFCESSDYWKEYGHYDFDFVFVDGSLGTYDCEEILKRTTDTFKIIFHDYIPGEKHRNTNKGGYNLNYLKKVAIENYDISTRTGGTHCVLAELNKDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |