NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211644_10003134

Scaffold Ga0211644_10003134


Overview

Basic Information
Taxon OID3300020416 Open in IMG/M
Scaffold IDGa0211644_10003134 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7635
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.972Long. (o)-84.601Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028198Metagenome / Metatranscriptome192Y
F084334Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0211644_1000313420F084334N/AMLSDIQLALLYPFVFFFTALSLYILLNPQDDEDDDPPDRGTLIPSYYQAS
Ga0211644_1000313421F028198N/AMTDTPELKEETPKLITREEYIADIKTRWKIFVKETEAFIEDVKKLIDFIKPYIVKALDKTKELYGSLKAKFKK

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