NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211553_10051221

Scaffold Ga0211553_10051221


Overview

Basic Information
Taxon OID3300020415 Open in IMG/M
Scaffold IDGa0211553_10051221 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1771
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.0869Long. (o)-70.0111Alt. (m)Depth (m)590
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211553_100512212F015741N/AMGCSLPLVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESDPPEIVSEDLSKVSRNNDIYREVCKEHKSMIDKMKDKADRVIDKTLTATEEEEDG
Ga0211553_100512214F022754N/AMNELIITIMLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYNATPVSCSFKPRHAKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE
Ga0211553_100512216F036736GAGGMDKLNEMLIGTLALMGAFITKRVFNNHDTLSDRITALEKIVLTKDDINGIERDVSMIVTHLITKGKSD
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