| Basic Information | |
|---|---|
| Taxon OID | 3300020415 Open in IMG/M |
| Scaffold ID | Ga0211553_10022124 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2881 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_145 | |||||||
| Coordinates | Lat. (o) | 39.0869 | Long. (o) | -70.0111 | Alt. (m) | Depth (m) | 590 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F001606 | Metagenome | 664 | N |
| F001922 | Metagenome | 617 | Y |
| F014859 | Metagenome | 259 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211553_100221242 | F001922 | GGA | MVLQKLLIEEGIKRGLKESQKYSVSVLGYDFVGLVSRLAVFFVMAFLINSYFVATISGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTIAVLIVVVEAMQYDKMLKEKGQKPNVTSLAVFGVIALGLSLITFPTIIQKLKERRILNA |
| Ga0211553_100221243 | F014859 | GAG | LVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKNKTVDTEETGNQIDNLINNAPRILDEVNKEIAAQREQGVTDQQMKGLLQKKQLLELGTSIPPEVYNIVAKPLVKKLIGFVGKI |
| Ga0211553_100221244 | F000704 | AGGTGG | MPHETRDIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFSQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNDRLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDILIELETVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSTLGQ |
| Ga0211553_100221245 | F001606 | AGGTGG | LTYGYDDVTFTSIGTGVAETQLNSGTSLSAPDPAHGFLACIPYQMELGAFTTNQSLLTSLRIQSDDVSVEPKKLVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQALVANAVAPGVGCTVIYDTDGTNGAEQYYTRPTNETASSATINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |