NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211523_10087565

Scaffold Ga0211523_10087565


Overview

Basic Information
Taxon OID3300020414 Open in IMG/M
Scaffold IDGa0211523_10087565 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1320
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F003777Metagenome / Metatranscriptome469Y
F041862Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211523_100875652F003777GGAGMSSKPKPNVITPFDDKQRFKNLVLEVIKDMEVFNHVPDSISLDGNNFTLTLSNKKLVYQDVSVDSLSDYVDVFLQGVKKPSDIYSVTDNGTNVVIVFTESITLSPGDIVNTDFSVKGKIVSR
Ga0211523_100875653F002188N/AMALKDLVNILTQVHEPDEYQLTAHDMNHTSYWIWKLTDGKMKDLDINLRTFRPEHARFDIFINGQYILENDYVFEHDGKNLLIKFIKANFSYNLSSSDEIKIEGDIQVG
Ga0211523_100875654F041862N/AQRIVRTNFTMAVNAYLLPEQFDNESTHKKSISGKKVVWGLETDMTGLDGGNVTNSTIKKKLMNEYSDAIDFISIRGSKQGSFVDADTMKITSVEQPKLPPELIGTFNEDEWYRVYINGVFIPKAKYNVVYQDNTDEIYFNFSTGSLSEGGTYPTDLQSTTTDLGYILENTDEFGVTGKFIEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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