| Basic Information | |
|---|---|
| Taxon OID | 3300020413 Open in IMG/M |
| Scaffold ID | Ga0211516_10056985 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1950 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_018 | |||||||
| Coordinates | Lat. (o) | 35.7593 | Long. (o) | 14.3453 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018008 | Metagenome / Metatranscriptome | 237 | Y |
| F021862 | Metagenome | 217 | Y |
| F028002 | Metagenome / Metatranscriptome | 193 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211516_100569853 | F021862 | GGAGG | MFRKLRRLFENWKKSLYDSYEPKPTVYKIGNKKYIKKKILNRPKGQKGPYLK |
| Ga0211516_100569855 | F028002 | AGGAGG | MKKIIDEVKKNKKAMIGVAIVVVIFAWMALSGDTTPVDAQ |
| Ga0211516_100569856 | F018008 | GGTGG | LLWAGIQGCTPKEYMDKQAPHETTDEMNARITEQMDAMDKEAEQFDGPTNFQGIADVLGCMFAPNDCPLKKRQEEQKLNR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |