NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211587_10027033

Scaffold Ga0211587_10027033


Overview

Basic Information
Taxon OID3300020411 Open in IMG/M
Scaffold IDGa0211587_10027033 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)5.9997Long. (o)73.914Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032243Metagenome180Y
F070308Metagenome123Y
F084111Metagenome112N
F092880Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211587_100270332F084111GAGMRHDWEPNDQQNWEMNCEAERAVRPLRDYNGDILNTGDLVWLTDYRPMRLAIVLGESHRENVLVRPVDGGYDFTINEIGCEKVKKGE
Ga0211587_100270333F070308GGAGGVKVGNLVKRRDPPWGTADQLGLVIDMETVEQAVYNPKVAKVQWLGGEYPPFMYKPDALIVVSEA
Ga0211587_100270337F032243N/AVPVVQLEHKETEEVSVSDNYEMFGAKEGWEYPQVGDLVEVASKSSLKTELGVVVEPCDAIKRDDLWCQVLLDSGKTKILPKRDVTVIQRGEE
Ga0211587_100270339F092880GAGGMKAGDLVKYNSRLLLVLEPNPDEFGYCDGWWRCMEVGTNRVRIYSPTQLTIIKTPEQFYL
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