NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211575_10007070

Scaffold Ga0211575_10007070


Overview

Basic Information
Taxon OID3300020407 Open in IMG/M
Scaffold IDGa0211575_10007070 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5035
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.3379Long. (o)-127.7376Alt. (m)Depth (m)650
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011848Metagenome / Metatranscriptome286Y
F071254Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0211575_100070703F071254N/AMRKSNSKAPKTRSHRVLFDHDSPYGHKVQKDKTKVIPRKEKYKKTD
Ga0211575_100070706F011848AGGAMSKTPYEIRLDLVKEAKEILQAKAKTPEDMPTTDDVLKEAERLNEFVSKKPFLDRK

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