NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10037512

Scaffold Ga0211659_10037512


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10037512 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2326
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F070147Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100375124F070147GGAGGMKDVLLLILEAASVDMKRRCEQNSDEESRDTYGKWHGQIVTMIDTIKRGGIK
Ga0211659_100375125F016004AGGTGGMNEELLKILKTLKEDFEMLQDGSWDLNYSDGSEIQASIDNVEKAINIVKNNE
Ga0211659_100375126F006200N/AMSKKQDWLETLVKKYSLPKEDKTEKRGMLSETQLKNLKDGKDKKTT
Ga0211659_100375127F015402N/AMGKIKKLLDFQFDFELNQDDIDEELMSRNDYDYQYEKWLKSKEFVEYVNGELDSTRPKYSEYDIMSATRYASEYITIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWITKNT
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