NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10004837

Scaffold Ga0211532_10004837


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10004837 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9480
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005819Metagenome / Metatranscriptome389Y
F006971Metagenome / Metatranscriptome361Y
F039398Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0211532_1000483711F039398N/ANIGYMTCLMFINNEKTLVDKLNNITELNPIDHQGGVSFELVLKSLPTYVEITMNHNGNFNIYTKTTKGEAEFKDEIVETLINFLHLFYVNMVDDENKLLMNAIDKTTYRKIAKRMHYRENYGDDSAI
Ga0211532_100048376F005819N/AMDYIDDMSLALPNQQQVGESNVDFKRFQYYLGLGASRTLKKVSQNFSLSDRRIYQIAAKNQWTDRVKAINKMLNEQIISEVFAQVGETARDLADNLKPLIFRIISEINERDLASMNPTELKGILDICYKMISQIYGLGHPQVTVNHIEQPQIRFKWDWEQDDDETFS
Ga0211532_100048379F006971N/AMKYQGIEYKKHQKVKFVIPTDNRIIDPQTKRILWKYGTIQFLANNKISAWVLENGTKEPIRISLFCILPVH
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