NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10000328

Scaffold Ga0211532_10000328


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10000328 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32421
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (25.40%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030770Metagenome / Metatranscriptome184Y
F041241Metagenome / Metatranscriptome160Y
F045129Metagenome / Metatranscriptome153Y
F061854Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211532_1000032812F030770GAGMSNLEKPKVTKPWSKEMYEWNDNVSQLMKTEIKIQIENYKDDWNKLNQLMQLCGGIQYGDGYDVSDLYKGCLDELENVQNYWLNEEWDYAVKKGIVTNCVNVQFVGY
Ga0211532_1000032813F061854N/AMFKKVKSKMLTYLFTDWIKNEEDIETLLLTKQMIENRKNKLTGHVPIIGFRTQSKVNGGI
Ga0211532_1000032817F041241N/AMKLDFRSRTTYTLTQVTEPITLDSEDFRNANPPYEGETEEDFWKYISEHLSDWDAEEYLDNNEDNFSEDLKDDLWNTFIEYPTEEMYDSRTKSDEIIMEAGKIDKEYTKYAGFNAKYNNDWNG
Ga0211532_1000032846F045129N/AMSLNYIEEPYREKIINILSTNDSDEKKYQKLKLYLISEPYFKHFTSEPSWLTKEIIKDFG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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