NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211583_10029893

Scaffold Ga0211583_10029893


Overview

Basic Information
Taxon OID3300020397 Open in IMG/M
Scaffold IDGa0211583_10029893 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)6.0124Long. (o)73.8985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F029594Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0211583_100298932F006217AGGAMIELLLSVIEEPNQIHKYCMSKHDHWTGRAACVQELRHAQRKLEVETLRQFLKDNPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0211583_100298934F005813AGGAMRLYKNSNGVWAGTQADARKYCGKVYSTVDVPTDKPSLLAFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALELSKAEKQDDS
Ga0211583_100298937F029594AGGAGGMLPDEMEAEKNRKIILAQADEIDILKRNVRDLQEQLTAAHIKIKDLTETKEYYLERY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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