NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10000057

Scaffold Ga0211497_10000057


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10000057 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50640
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (42.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F029925Metagenome / Metatranscriptome187Y
F042280Metagenome / Metatranscriptome158Y
F092065Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211497_1000005728F029925AGGAMFVLKSILNQAGAVWQVESIAMRKKEAERLLKRRLSVNDGSRRYGLFPA
Ga0211497_1000005778F042280GGAGMKIKNKWDEEFEVNVGDWVGFKCDIEQIGRVKEIQRRGAIIVENKNGFDGDYIGGDTEALIGFDEIWKED
Ga0211497_1000005782F092065AGGAMQEIIDKIYERMEFCANAHGATQEDEHNYILELSCLNEVLDQIEGFPWDHFENEVD
Ga0211497_1000005790F007770AGGMSGEGLSVSFRRTSMTAKSNQELLREFQGLVYSNKKIMSHMKWYGHANSVTLEEHGDEELAEWQREGVAIKDTFCFCISLYESWHEDADIYESHNRDDSFVSLAREFAKDNWLMYFAEGFPAEWIETETIDGEKCWNHFKVKPNDKNIDKICKIWHNYGMSMVRAEQFGQTDKMKSHYWTLARDDIKAVMEK
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