NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211618_10031280

Scaffold Ga0211618_10031280


Overview

Basic Information
Taxon OID3300020393 Open in IMG/M
Scaffold IDGa0211618_10031280 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F005720Metagenome / Metatranscriptome392Y
F049044Metagenome / Metatranscriptome147N
F051469Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0211618_100312802F051469AGGAGMKKFTVEINVGDVVEIGRFHLANQEVKNIEIDKWGHPVLVLESGRKRGVFNMRFKKLIPDDVDRKQEPAEVMMTKEQWAEAERKIAESKANQ
Ga0211618_100312803F005720AGGAGGMPITSNATANMSRRQSFNGKGLTFIEMMFDDEVTTTATTPDTKGSVFQDMSTLVGTFGTILAQSYTLAAKATEKDAAAAASIIEDELCDYYTFIVEGTPGQFNKADSAGDINLDPGQNETSDPGVIADAEADIEAEILDRISGSSDSAGGVHVDVRFLPADGVVSTGVDEVYGVNSARVN
Ga0211618_100312804F049044AGGAGGMAYDSSKVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDMSGETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSNTQKTYMVRTDQLDTLSGTTTKAALQAYIRTLDQASSSFPGVTADLTGATVTETKIGILTANAVS
Ga0211618_100312805F002093AGGAGGMAYDGTIPAGGPGNFQTPNLAHEGEGVRVDFITVDYINAMNAEVTHSTASANTAGLKLSMEAIQNQGVNILGHGALGNSNTEQTYMVRADSLDTISDTTTVAAIQAAIRGLNALTPDKVTATISSATAADRDMSDTQVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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