| Basic Information | |
|---|---|
| Taxon OID | 3300020392 Open in IMG/M |
| Scaffold ID | Ga0211666_10012272 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4259 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_100 | |||||||
| Coordinates | Lat. (o) | -12.9488 | Long. (o) | -96.0293 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211666_100122721 | F089156 | N/A | FKHNTYLIDCELSEYDVISSISKQYPVISMQSNEDCAYIDVYERHTTSYTTVSPEDTLAPLIEKLDLLAVQEPKILCFSWQMDRNYIVDYRIEQLLKAGHLVVCAGGNRDLPVIDISPVAVDGVIRVGGNKHNGYYQNWIDIYDVTDPSEPNSNKAVHNICTKMVHKQLELDYELGYYSDSSIRSAPWPLRLAQTPSKQTKYYEFNPVSNLRYCAGEHLIPVRPGDNVSMLYGGCELENFVEARYVDLGVELPRGITFNLQSGWLYGTFKFKQDMFHRFQVDINGQLFEYHLISCDAENKLEYNDVKEKYYNRPYNAPPFTMREYWVPMARPIKLLEPGDPFIRTYNLNDLHLYREYE |
| Ga0211666_100122722 | F034245 | GGAG | MRGVTFSEFGNGQNVDMFYNAPDCVPDIPLKEATNTAIKIRNKYTKDIYVWCDYSVQHMYSQIAMQGFKMAGIDFVAAIPVLSDNLSKRENDCTIAYCEARGIKYELFHIDVPALFDGPEFLYWGENFPTTQPQMTIVGKFFDLLPDCCVVYPGFMAHVSNSDWTRSKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVDMYTSWMFTQSYGDVLKSNTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDKALRQRLAPYGPLTMKYASLQYTVKVDTRLKEMLEKHHETNFDFINKLF |
| Ga0211666_100122725 | F022909 | GGA | MDDINDKEILRTFFEGKIGCIEYSDKWLPQLEKFCSIAKDCGYENNSSPEAMKVDEIQYHCMVHIPTNEIYAVAGVQYMPEYKDGYYRIWTRLCRIPKNDIPMTRATRYGRGEMPEFDGLLYFNCEWATKQSNFKATFGTTLANKAYADNYVRSSNTITDYVKRNWWLKKGIAEPEGITEFYSVPQVVWKMHFDKFKELNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |